| Grupo A | PG | J | V | E | D | GP | GC | SG | ||
| 1 |
|
Valencia | 13 | 6 | 4 | 1 | 1 | 12 | 7 | 5 |
| 2 |
|
Swansea City | 8 | 6 | 2 | 2 | 2 | 6 | 4 | 2 |
| 3 |
|
St. Gallen | 6 | 6 | 2 | 0 | 4 | 6 | 13 | -7 |
| 4 |
|
Kuban | 6 | 6 | 1 | 3 | 2 | 7 | 7 | 0 |
| Grupo B | PG | J | V | E | D | GP | GC | SG | ||
| 1 |
|
Ludogorets | 16 | 6 | 5 | 1 | 0 | 11 | 2 | 9 |
| 2 |
|
Chornomorets | 10 | 6 | 3 | 1 | 2 | 6 | 6 | 0 |
| 3 |
|
PSV | 7 | 6 | 2 | 1 | 3 | 4 | 5 | -1 |
| 4 |
|
Dinamo Zagreb | 1 | 6 | 0 | 1 | 5 | 3 | 11 | -8 |
| Grupo C | PG | J | V | E | D | GP | GC | SG | ||
| 1 |
|
Salzburgo | 18 | 6 | 6 | 0 | 0 | 15 | 3 | 12 |
| 2 |
|
Esbjerg | 12 | 6 | 4 | 0 | 2 | 8 | 8 | 0 |
| 3 |
|
Elfsborg | 4 | 6 | 1 | 1 | 4 | 5 | 10 | -5 |
| 4 |
|
S. Liege | 1 | 6 | 0 | 1 | 5 | 6 | 13 | -7 |
| Grupo D | PG | J | V | E | D | GP | GC | SG | ||
| 1 |
|
Rubin Kazan | 14 | 6 | 4 | 2 | 0 | 14 | 4 | 10 |
| 2 |
|
Maribor | 7 | 6 | 2 | 1 | 3 | 9 | 12 | -3 |
| 3 |
|
Zulte Waregem | 7 | 6 | 2 | 1 | 3 | 4 | 10 | -6 |
| 4 |
|
Wigan | 5 | 6 | 1 | 2 | 3 | 6 | 7 | -1 |
| Grupo E | PG | J | V | E | D | GP | GC | SG | ||
| 1 |
|
Fiorentina | 16 | 6 | 5 | 1 | 0 | 12 | 3 | 9 |
| 2 |
|
Dnipro Dnipropetrovsk | 12 | 6 | 4 | 0 | 2 | 11 | 5 | 6 |
| 3 |
|
Paços Ferreira | 3 | 6 | 0 | 3 | 3 | 1 | 8 | -7 |
| 4 |
|
Pandurii | 2 | 6 | 0 | 2 | 4 | 3 | 11 | -8 |
| Grupo F | PG | J | V | E | D | GP | GC | SG | ||
| 1 |
|
Eintracht Frankfurt | 15 | 6 | 5 | 0 | 1 | 13 | 4 | 9 |
| 2 |
|
Maccabi Tel-Aviv | 11 | 6 | 3 | 2 | 1 | 7 | 5 | 2 |
| 3 |
|
APOEL | 5 | 6 | 1 | 2 | 3 | 3 | 8 | -5 |
| 4 |
|
Bordeaux | 3 | 6 | 1 | 0 | 5 | 4 | 10 | -6 |
| Grupo G | PG | J | V | E | D | GP | GC | SG | ||
| 1 |
|
Genk | 14 | 6 | 4 | 2 | 0 | 10 | 5 | 5 |
| 2 |
|
Dinamo Kiev | 10 | 6 | 3 | 1 | 2 | 11 | 7 | 4 |
| 3 |
|
Rapid Vienna | 6 | 6 | 1 | 3 | 2 | 8 | 10 | -2 |
| 4 |
|
Thun | 3 | 6 | 1 | 0 | 5 | 3 | 10 | -7 |
| Grupo H | PG | J | V | E | D | GP | GC | SG | ||
| 1 |
|
Sevilla | 12 | 6 | 3 | 3 | 0 | 9 | 4 | 5 |
| 2 |
|
Slovan Liberec | 9 | 6 | 2 | 3 | 1 | 9 | 8 | 1 |
| 3 |
|
Freiburg | 6 | 6 | 1 | 3 | 2 | 5 | 8 | -3 |
| 4 |
|
Estoril | 3 | 6 | 0 | 3 | 3 | 5 | 8 | -3 |
| Grupo I | PG | J | V | E | D | GP | GC | SG | ||
| 1 |
|
Lyon | 12 | 6 | 3 | 3 | 0 | 6 | 3 | 3 |
| 2 |
|
Betis | 9 | 6 | 2 | 3 | 1 | 3 | 2 | 1 |
| 3 |
|
Vitória de Guimarães | 5 | 6 | 1 | 2 | 3 | 6 | 5 | 1 |
| 4 |
|
Rijeka | 4 | 6 | 0 | 4 | 2 | 2 | 7 | -5 |
| Grupo J | PG | J | V | E | D | GP | GC | SG | ||
| 1 |
|
Trabzonspor | 14 | 6 | 4 | 2 | 0 | 13 | 6 | 7 |
| 2 |
|
Lazio | 12 | 6 | 3 | 3 | 0 | 8 | 4 | 4 |
| 3 |
|
Apollon Limassol | 4 | 6 | 1 | 1 | 4 | 5 | 10 | -5 |
| 4 |
|
Legia Warszawa | 3 | 6 | 1 | 0 | 5 | 2 | 8 | -6 |
| Grupo K | PG | J | V | E | D | GP | GC | SG | ||
| 1 |
|
Tottenham | 18 | 6 | 6 | 0 | 0 | 15 | 2 | 13 |
| 2 |
|
Anzhi Makhachkala | 8 | 6 | 2 | 2 | 2 | 4 | 7 | -3 |
| 3 |
|
Sheriff | 6 | 6 | 1 | 3 | 2 | 5 | 6 | -1 |
| 4 |
|
Tromso | 1 | 6 | 0 | 1 | 5 | 1 | 10 | -9 |
| Grupo L | PG | J | V | E | D | GP | GC | SG | ||
| 1 |
|
PAOK | 12 | 6 | 3 | 3 | 0 | 10 | 6 | 4 |
| 2 |
|
AZ Alkmaar | 12 | 6 | 3 | 3 | 0 | 8 | 4 | 4 |
| 3 |
|
Maccabi Haifa | 5 | 6 | 1 | 2 | 3 | 6 | 9 | -3 |
| 4 |
|
Shakhter Karagandy | 2 | 6 | 0 | 2 | 4 | 5 | 10 | -5 |
